From bugzilla-daemon at ecoinformatics.org Wed Nov 4 13:36:20 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Wed, 4 Nov 2009 13:36:20 -0800 (PST) Subject: [morpho-dev] [Bug 4531] New: - Data Package titles for SOME Data Packages not displayed Message-ID: <20091104213620.BB64728406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4531 Summary: Data Package titles for SOME Data Packages not displayed Product: Morpho Version: 1.7.0 Platform: All OS/Version: All Status: NEW Severity: normal Priority: P1 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: reeves at nceas.ucsb.edu QAContact: morpho-dev at ecoinformatics.org The Morpho search results screen does not display the Title field for some data packages, even though the packages have valid titles entered (as validated by the Morpho EML editor. To replicate: 1) Start a Morpho session 2) Search for the string 'POD!', checking the All box. 3) Search results should yield ~ 30 data packages; at the top of the results, records for Document IDs stoms.10.4, stoms.9.5, stoms.8.4, stoms.6.4 do not show the titles that are in the Metacat entries. Surname field also blank. I discussed this with the author of the packages (Dave Stoms); he used Morpho 1.7 on Windows platform to create the packages, with no problems. Would be nice to have this fixed soon, as Marissa Bauer and I work to wrap up the POD data registration efforts. RR From bugzilla-daemon at ecoinformatics.org Wed Nov 4 14:03:26 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Wed, 4 Nov 2009 14:03:26 -0800 (PST) Subject: [morpho-dev] [Bug 4531] - Data Package titles for SOME Data Packages not displayed Message-ID: <20091104220326.9406E28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4531 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Status|NEW |RESOLVED Resolution| |FIXED ------- Comment #1 from tao at nceas.ucsb.edu 2009-11-04 14:03 ------- After rebuilding index at morpho, those packages can display title now. From bugzilla-daemon at ecoinformatics.org Sun Nov 8 15:52:34 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Sun, 8 Nov 2009 15:52:34 -0800 (PST) Subject: [morpho-dev] [Bug 4537] New: - MS accesss file importing leads an invalid eml-2.1.0 document Message-ID: <20091108235234.5E9CC284070@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 Summary: MS accesss file importing leads an invalid eml-2.1.0 document Product: Morpho Version: 1.6.1 Platform: Other OS/Version: All Status: NEW Severity: normal Priority: P2 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: tao at nceas.ucsb.edu QAContact: morpho-dev at ecoinformatics.org Hi Jing, Here is a copy of the local file (906.2) that I am having problems saving to the network. I am also having this problem with 903.3 901.4 904.7 917.2 910.4 For all of these data packages I have been able to save to the network before. The only new thing that I have done to each of these packages is import an MS access file (under the data drop down menu) Thanks! Marissa From bugzilla-daemon at ecoinformatics.org Sun Nov 8 15:54:15 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Sun, 8 Nov 2009 15:54:15 -0800 (PST) Subject: [morpho-dev] [Bug 4537] - MS accesss file importing leads an invalid eml-2.1.0 document Message-ID: <20091108235415.2C812284070@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 ------- Comment #1 from tao at nceas.ucsb.edu 2009-11-08 15:54 ------- I took a look and found this module creates an xml like "". This is valid in eml-2.0.0 and eml-2.0.1. But it is invalid in eml-2.1.0. From tao at nceas.ucsb.edu Mon Nov 9 17:58:26 2009 From: tao at nceas.ucsb.edu (Jing Tao) Date: Mon, 9 Nov 2009 17:58:26 -0800 (PST) Subject: [morpho-dev] objectname in eml when morpho imports a text file Message-ID: Hi, devs: When morpho imports a text file into an eml package, currently it stores the file name as objectName rather thank the full path. For instance, morpho will store "rainfall-2007.txt" as objectName rather than "C:\data\rainfall-2007.txt". I am working on a morpho module, which can reload existed eml to entity wizard. So in DataLocation page, I need the information of the full text file path. I propose that morpho will store the full path rather than the file name as the objectName in eml. In our case, morpho will store "C:\data\rainfall-2007.txt" as objectName. I am just wondering if this approach violates eml's practice. Any comments and suggestions will be really appreciated. Regards, Jing Jing Tao National Center for Ecological Analysis and Synthesis (NCEAS) 735 State St. Suite 204 Santa Barbara, CA 93101 From jones at nceas.ucsb.edu Mon Nov 9 18:08:09 2009 From: jones at nceas.ucsb.edu (Matt Jones) Date: Mon, 9 Nov 2009 17:08:09 -0900 Subject: [morpho-dev] [eml-dev] objectname in eml when morpho imports a text file In-Reply-To: References: Message-ID: Hi Jing -- We've used objectName for just the filename in the past, so that objects that are stored in metacat and other apps can properly name downloaded files. So changing it to use the full path there would potentially break metacat and other apps, although it is technically allowed in EML. Storing the full path of a specific machine in the metadata seems like a fragile approach anyways, highly subject to getting out of date as people rearrange their hard drives. Lets discuss on IRC what you are trying to accomplish with this and some possible alternatives. Matt On Mon, Nov 9, 2009 at 4:58 PM, Jing Tao wrote: > Hi, devs: > > When morpho imports a text file into an eml package, currently it stores > the file name as objectName rather thank the full path. For instance, morpho > will store "rainfall-2007.txt" as objectName rather than > "C:\data\rainfall-2007.txt". > > I am working on a morpho module, which can reload existed eml to entity > wizard. So in DataLocation page, I need the information of the full text > file path. I propose that morpho will store the full path rather than the > file name as the objectName in eml. In our case, morpho will store > "C:\data\rainfall-2007.txt" as objectName. I am just wondering if this > approach violates eml's practice. > > Any comments and suggestions will be really appreciated. > > Regards, > > Jing > > > > Jing Tao > National Center for Ecological > Analysis and Synthesis (NCEAS) > 735 State St. Suite 204 > Santa Barbara, CA 93101 > _______________________________________________ > Eml-dev mailing list > Eml-dev at ecoinformatics.org > http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/eml-dev > -------------- next part -------------- An HTML attachment was scrubbed... URL: From tao at nceas.ucsb.edu Tue Nov 10 09:56:10 2009 From: tao at nceas.ucsb.edu (Jing Tao) Date: Tue, 10 Nov 2009 09:56:10 -0800 (PST) Subject: [morpho-dev] [eml-dev] objectname in eml when morpho imports a text file In-Reply-To: References: Message-ID: Hi, matt: Yeah, I forgot Metacat would use it even though I fixed bug the objectName was wrong in morpho and metacat couldn't recognize it :( I am working setPageData(OrderedMap map) method in DataLocation page. This method wasn't implemented. Now when we open an incomplete document, we need this method. When we save incomplete document, I already add a block of additionalMetadata to describe the status. The block looks like: 1 edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity< /class> So I can add an another element textFilePath there: 1 edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation c:\data\rainfall-2007.txt edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity Hi Jing -- > > We've used objectName for just the filename in the past, so that objects > that are stored in metacat and other apps can properly name downloaded > files. So changing it to use the full path there would potentially break > metacat and other apps, although it is technically allowed in EML. Storing > the full path of a specific machine in the metadata seems like a fragile > approach anyways, highly subject to getting out of date as people rearrange > their hard drives. Lets discuss on IRC what you are trying to accomplish > with this and some possible alternatives. > > Matt > > On Mon, Nov 9, 2009 at 4:58 PM, Jing Tao wrote: > >> Hi, devs: >> >> When morpho imports a text file into an eml package, currently it stores >> the file name as objectName rather thank the full path. For instance, morpho >> will store "rainfall-2007.txt" as objectName rather than >> "C:\data\rainfall-2007.txt". >> >> I am working on a morpho module, which can reload existed eml to entity >> wizard. So in DataLocation page, I need the information of the full text >> file path. I propose that morpho will store the full path rather than the >> file name as the objectName in eml. In our case, morpho will store >> "C:\data\rainfall-2007.txt" as objectName. I am just wondering if this >> approach violates eml's practice. >> >> Any comments and suggestions will be really appreciated. >> >> Regards, >> >> Jing >> >> >> >> Jing Tao >> National Center for Ecological >> Analysis and Synthesis (NCEAS) >> 735 State St. Suite 204 >> Santa Barbara, CA 93101 >> _______________________________________________ >> Eml-dev mailing list >> Eml-dev at ecoinformatics.org >> http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/eml-dev >> > From tao at nceas.ucsb.edu Tue Nov 10 10:07:47 2009 From: tao at nceas.ucsb.edu (Jing Tao) Date: Tue, 10 Nov 2009 10:07:47 -0800 (PST) Subject: [morpho-dev] [eml-dev] objectname in eml when morpho imports a text file In-Reply-To: References: Message-ID: Thanks, Matt. I will do this way. Jing Jing Tao National Center for Ecological Analysis and Synthesis (NCEAS) 735 State St. Suite 204 Santa Barbara, CA 93101 On Tue, 10 Nov 2009, Matt Jones wrote: > This sounds like a great approach Jing -- it puts the information in the > document without polluting the EML fields with application-specific state > information. And you should indeed remove it when you publish the EML > document to metacat. > > Matt > > On Tue, Nov 10, 2009 at 8:56 AM, Jing Tao wrote: > >> Hi, matt: >> >> Yeah, I forgot Metacat would use it even though I fixed bug the objectName >> was wrong in morpho and metacat couldn't recognize it :( >> >> I am working setPageData(OrderedMap map) method in DataLocation page. This >> method wasn't implemented. Now when we open an incomplete document, we need >> this method. >> >> When we save incomplete document, I already add a block of >> additionalMetadata to describe the status. The block looks like: >> >> >> >> >> 1 >> >> >> edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation >> >> >> >> edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity< >> /class> >> >> >> >> >> So I can add an another element textFilePath there: >> >> >> >> >> 1 >> >> >> edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation >> c:\data\rainfall-2007.txt >> >> >> >> edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity >> >> >> >> > >> This element will be used to store the full path. Moreover, the entire >> additionalMetadata part is only temporary. When user saves package locally >> or remotely, they will be removed. >> >> What do you think about this approach? >> >> Thanks, >> >> >> Jing >> >> >> Jing Tao >> National Center for Ecological >> Analysis and Synthesis (NCEAS) >> 735 State St. Suite 204 >> Santa Barbara, CA 93101 >> >> On Mon, 9 Nov 2009, Matt Jones wrote: >> >> Hi Jing -- >>> >>> We've used objectName for just the filename in the past, so that objects >>> that are stored in metacat and other apps can properly name downloaded >>> files. So changing it to use the full path there would potentially break >>> metacat and other apps, although it is technically allowed in EML. Storing >>> the full path of a specific machine in the metadata seems like a fragile >>> approach anyways, highly subject to getting out of date as people >>> rearrange >>> their hard drives. Lets discuss on IRC what you are trying to accomplish >>> with this and some possible alternatives. >>> >>> Matt >>> >>> On Mon, Nov 9, 2009 at 4:58 PM, Jing Tao wrote: >>> >>> Hi, devs: >>>> >>>> When morpho imports a text file into an eml package, currently it stores >>>> the file name as objectName rather thank the full path. For instance, >>>> morpho >>>> will store "rainfall-2007.txt" as objectName rather than >>>> "C:\data\rainfall-2007.txt". >>>> >>>> I am working on a morpho module, which can reload existed eml to entity >>>> wizard. So in DataLocation page, I need the information of the full text >>>> file path. I propose that morpho will store the full path rather than the >>>> file name as the objectName in eml. In our case, morpho will store >>>> "C:\data\rainfall-2007.txt" as objectName. I am just wondering if this >>>> approach violates eml's practice. >>>> >>>> Any comments and suggestions will be really appreciated. >>>> >>>> Regards, >>>> >>>> Jing >>>> >>>> >>>> >>>> Jing Tao >>>> National Center for Ecological >>>> Analysis and Synthesis (NCEAS) >>>> 735 State St. Suite 204 >>>> Santa Barbara, CA 93101 >>>> _______________________________________________ >>>> Eml-dev mailing list >>>> Eml-dev at ecoinformatics.org >>>> http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/eml-dev >>>> >>>> >>> > From jones at nceas.ucsb.edu Tue Nov 10 09:59:52 2009 From: jones at nceas.ucsb.edu (Matt Jones) Date: Tue, 10 Nov 2009 08:59:52 -0900 Subject: [morpho-dev] [eml-dev] objectname in eml when morpho imports a text file In-Reply-To: References: Message-ID: This sounds like a great approach Jing -- it puts the information in the document without polluting the EML fields with application-specific state information. And you should indeed remove it when you publish the EML document to metacat. Matt On Tue, Nov 10, 2009 at 8:56 AM, Jing Tao wrote: > Hi, matt: > > Yeah, I forgot Metacat would use it even though I fixed bug the objectName > was wrong in morpho and metacat couldn't recognize it :( > > I am working setPageData(OrderedMap map) method in DataLocation page. This > method wasn't implemented. Now when we open an incomplete document, we need > this method. > > When we save incomplete document, I already add a block of > additionalMetadata to describe the status. The block looks like: > > > > > 1 > > > edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation > > > > edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity< > /class> > > > > > So I can add an another element textFilePath there: > > > > > 1 > > > edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.DataLocation > c:\data\rainfall-2007.txt > > > > edu.ucsb.nceas.morpho.plugins.datapackagewizard.pages.TextImportEntity > > > > > This element will be used to store the full path. Moreover, the entire > additionalMetadata part is only temporary. When user saves package locally > or remotely, they will be removed. > > What do you think about this approach? > > Thanks, > > > Jing > > > Jing Tao > National Center for Ecological > Analysis and Synthesis (NCEAS) > 735 State St. Suite 204 > Santa Barbara, CA 93101 > > On Mon, 9 Nov 2009, Matt Jones wrote: > > Hi Jing -- >> >> We've used objectName for just the filename in the past, so that objects >> that are stored in metacat and other apps can properly name downloaded >> files. So changing it to use the full path there would potentially break >> metacat and other apps, although it is technically allowed in EML. Storing >> the full path of a specific machine in the metadata seems like a fragile >> approach anyways, highly subject to getting out of date as people >> rearrange >> their hard drives. Lets discuss on IRC what you are trying to accomplish >> with this and some possible alternatives. >> >> Matt >> >> On Mon, Nov 9, 2009 at 4:58 PM, Jing Tao wrote: >> >> Hi, devs: >>> >>> When morpho imports a text file into an eml package, currently it stores >>> the file name as objectName rather thank the full path. For instance, >>> morpho >>> will store "rainfall-2007.txt" as objectName rather than >>> "C:\data\rainfall-2007.txt". >>> >>> I am working on a morpho module, which can reload existed eml to entity >>> wizard. So in DataLocation page, I need the information of the full text >>> file path. I propose that morpho will store the full path rather than the >>> file name as the objectName in eml. In our case, morpho will store >>> "C:\data\rainfall-2007.txt" as objectName. I am just wondering if this >>> approach violates eml's practice. >>> >>> Any comments and suggestions will be really appreciated. >>> >>> Regards, >>> >>> Jing >>> >>> >>> >>> Jing Tao >>> National Center for Ecological >>> Analysis and Synthesis (NCEAS) >>> 735 State St. Suite 204 >>> Santa Barbara, CA 93101 >>> _______________________________________________ >>> Eml-dev mailing list >>> Eml-dev at ecoinformatics.org >>> http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/eml-dev >>> >>> >> -------------- next part -------------- An HTML attachment was scrubbed... URL: From dlebauer at illinois.edu Tue Nov 10 17:22:23 2009 From: dlebauer at illinois.edu (David LeBauer) Date: Tue, 10 Nov 2009 19:22:23 -0600 Subject: [morpho-dev] is it possible to import mysql db to morpho? keep it synchronized? In-Reply-To: References: Message-ID: > > Hi All, > > I am trying to document my database using Morpho, and I have a question: > > My database is on mysql, and I am wondering if it is possible to do a > direct import of the tables to Morpho, > > It would be helpful to me if the data types were generated automatically. > > Thank you for your help, > > David > > -- > David LeBauer, PhD > Energy Biosciences Institute > University of Illinois Urbana-Champaign > 1206 W. Gregory Drive > Urbana, IL 61801 > U.S.A. > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From jones at nceas.ucsb.edu Wed Nov 11 09:41:11 2009 From: jones at nceas.ucsb.edu (Matt Jones) Date: Wed, 11 Nov 2009 08:41:11 -0900 Subject: [morpho-dev] is it possible to import mysql db to morpho? keep it synchronized? In-Reply-To: References: Message-ID: Hi David, We don't have a way of importing mysql metadata directly at this time. However, we do have a plugin for Morpho to import metadata about MS access tables directly from the access DB, and I could imagine adapting the current plugin to work with mysql. It does not import the data -- just the metadata -- and could probably be adapted to collect metadata from other relational data sources. The plugin ships with Morpho, but was recently discovered to produce invalid EML 2.1.0 documents, and will need to be fixed before it is usable in the current version of Morpho. See the bug description for details: http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 The bug description will be updated when we have a fix for the problem. If you think it would be worthwhile to be able to import metadata from mysql (and possibly other relational dbs), could you file a bug report and mark it as a feature request, and describe what you'd like to see in such a feature? Thanks, Matt On Tue, Nov 10, 2009 at 4:22 PM, David LeBauer wrote: > Hi All, >> >> I am trying to document my database using Morpho, and I have a question: >> >> My database is on mysql, and I am wondering if it is possible to do a >> direct import of the tables to Morpho, >> >> It would be helpful to me if the data types were generated automatically. >> >> Thank you for your help, >> >> David >> >> -- >> David LeBauer, PhD >> Energy Biosciences Institute >> University of Illinois Urbana-Champaign >> 1206 W. Gregory Drive >> Urbana, IL 61801 >> U.S.A. >> >> > _______________________________________________ > Morpho-dev mailing list > Morpho-dev at ecoinformatics.org > http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/morpho-dev > > -------------- next part -------------- An HTML attachment was scrubbed... URL: From tao at nceas.ucsb.edu Wed Nov 11 09:47:51 2009 From: tao at nceas.ucsb.edu (Jing Tao) Date: Wed, 11 Nov 2009 09:47:51 -0800 (PST) Subject: [morpho-dev] is it possible to import mysql db to morpho? keep it synchronized? In-Reply-To: References: Message-ID: Hi, David: Matt sent out this email while I was drafting a reply :) I totally agree with Matt. If you think morpho need this feature, would you please file a bug about it? Thanks, Jing Jing Tao National Center for Ecological Analysis and Synthesis (NCEAS) 735 State St. Suite 204 Santa Barbara, CA 93101 On Wed, 11 Nov 2009, Matt Jones wrote: > Hi David, > > We don't have a way of importing mysql metadata directly at this time. > However, we do have a plugin for Morpho to import metadata about MS access > tables directly from the access DB, and I could imagine adapting the current > plugin to work with mysql. It does not import the data -- just the metadata > -- and could probably be adapted to collect metadata from other relational > data sources. The plugin ships with Morpho, but was recently discovered to > produce invalid EML 2.1.0 documents, and will need to be fixed before it is > usable in the current version of Morpho. See the bug description for > details: > http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 > The bug description will be updated when we have a fix for the problem. > > If you think it would be worthwhile to be able to import metadata from mysql > (and possibly other relational dbs), could you file a bug report and mark it > as a feature request, and describe what you'd like to see in such a feature? > > Thanks, > Matt > > On Tue, Nov 10, 2009 at 4:22 PM, David LeBauer wrote: > >> Hi All, >>> >>> I am trying to document my database using Morpho, and I have a question: >>> >>> My database is on mysql, and I am wondering if it is possible to do a >>> direct import of the tables to Morpho, >>> >>> It would be helpful to me if the data types were generated automatically. >>> >>> Thank you for your help, >>> >>> David >>> >>> -- >>> David LeBauer, PhD >>> Energy Biosciences Institute >>> University of Illinois Urbana-Champaign >>> 1206 W. Gregory Drive >>> Urbana, IL 61801 >>> U.S.A. >>> >>> >> _______________________________________________ >> Morpho-dev mailing list >> Morpho-dev at ecoinformatics.org >> http://mercury.nceas.ucsb.edu/ecoinformatics/mailman/listinfo/morpho-dev >> >> > From bugzilla-daemon at ecoinformatics.org Wed Nov 11 14:05:03 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Wed, 11 Nov 2009 14:05:03 -0800 (PST) Subject: [morpho-dev] [Bug 4542] New: - Feature Request: Import / update metadata from MySQL database Message-ID: <20091111220503.6D3DF284070@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4542 Summary: Feature Request: Import / update metadata from MySQL database Product: Morpho Version: 1.7.0 Platform: All OS/Version: All Status: NEW Severity: normal Priority: P1 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: dlebauer at gmail.com QAContact: morpho-dev at ecoinformatics.org I am writing to request a feature for Morpho that would facilitate creating and updating metadata from an existing database. I am using MySQL, but I imagine that the feature could be more general. I would like for it to: a) query a database to generate relevant metadata or b) generate metadata from an SQL CREATE script For each table give table name to entityName Add comments to Description Make list of attributeNames from column headers For each attributeName entityName: is column name attributeDefinition: state if it is a primary key or foreign key, if foreign key, write foreign key and the name of referenced table storageType derived from datatype managementScale/unit/numericDomain/range etc. should be derived from datatype (and data if connected to database) Thanks! -David From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:43:23 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:43:23 -0800 (PST) Subject: [morpho-dev] [Bug 3473] - allow user to attach, replace, or delete data table on existing entity description Message-ID: <20091112194323.7130F28406E@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=3473 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Summary|allow user to attach data |allow user to attach, |table to existing entity |replace, or delete data |description |table on existing entity | |description From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:51:16 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:51:16 -0800 (PST) Subject: [morpho-dev] [Bug 4537] - MS accesss file importing leads an invalid eml-2.1.0 document Message-ID: <20091112195116.4372C28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|normal |critical Target Milestone|Unspecified |1.8.0 From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:51:46 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:51:46 -0800 (PST) Subject: [morpho-dev] [Bug 4459] - Need a minimum display of access order in Access page Message-ID: <20091112195146.05F4028406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4459 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|normal |critical Target Milestone|Unspecified |1.8.0 From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:53:35 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:53:35 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091112195335.8269928406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|normal |critical Target Milestone|Unspecified |1.8.0 From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:57:32 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:57:32 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091112195732.E6AF228406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 ------- Comment #1 from leinfelder at nceas.ucsb.edu 2009-11-12 11:57 ------- i've encountered this even with just the JOptionPane that is used for "serious" Log messages. After I click OK, the underlying window is frozen and I must restart Morpho. This seems to happen mostly on OS X rather than Ubuntu. From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:59:13 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:59:13 -0800 (PST) Subject: [morpho-dev] [Bug 4366] - morpho should display common mime types (e.g., images) Message-ID: <20091112195913.C949528406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4366 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Target Milestone|1.8.0 |1.9 From bugzilla-daemon at ecoinformatics.org Thu Nov 12 11:59:00 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 11:59:00 -0800 (PST) Subject: [morpho-dev] [Bug 4365] - New feature for creating otherEntity Message-ID: <20091112195900.B7A2628406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4365 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Target Milestone|1.8.0 |1.9 From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:00:55 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:00:55 -0800 (PST) Subject: [morpho-dev] [Bug 1847] - Import/Export features Message-ID: <20091112200055.0BE28284073@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=1847 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|critical |blocker From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:00:55 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:00:55 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091112200055.3AE91284075@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|critical |blocker From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:00:55 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:00:55 -0800 (PST) Subject: [morpho-dev] [Bug 4426] - export fails to create html with attribute information Message-ID: <20091112200055.5DAA928406E@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4426 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|critical |blocker From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:00:55 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:00:55 -0800 (PST) Subject: [morpho-dev] [Bug 4537] - MS accesss file importing leads an invalid eml-2.1.0 document Message-ID: <20091112200055.844A0284074@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4537 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Severity|critical |blocker From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:04:57 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:04:57 -0800 (PST) Subject: [morpho-dev] [Bug 1847] - Import EML documents into Morpho Message-ID: <20091112200457.8CB7528406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=1847 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- AssignedTo|sgarg at nceas.ucsb.edu |tao at nceas.ucsb.edu Summary|Import/Export features |Import EML documents into | |Morpho From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:09:10 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:09:10 -0800 (PST) Subject: [morpho-dev] [Bug 1847] - Import EML documents into Morpho Message-ID: <20091112200910.E70EF28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=1847 ------- Comment #5 from tao at nceas.ucsb.edu 2009-11-12 12:09 ------- During the import, if data file location is a remote one, we will do nothing. If it is in local file system, we should import it into morpho. From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:09:20 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:09:20 -0800 (PST) Subject: [morpho-dev] [Bug 4543] New: - export to FGDC BDP format Message-ID: <20091112200920.0AFAE28406E@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4543 Summary: export to FGDC BDP format Product: Morpho Version: 1.7.0 Platform: Other OS/Version: All Status: NEW Severity: blocker Priority: P1 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: jones at nceas.ucsb.edu QAContact: morpho-dev at ecoinformatics.org Include a 'format' dropdown in the Export dialog that allows people to choose the 'FGDC BDP' format as an export choice. The set of export formats should be configurable at runtime, and should allow for a mapping between the format name and an XSLT script used to generate that format from the EML document. From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:10:08 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:10:08 -0800 (PST) Subject: [morpho-dev] [Bug 1847] - import EML documents into Morpho Message-ID: <20091112201008.16EBB28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=1847 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Summary|Import EML documents into |import EML documents into |Morpho |Morpho From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:12:43 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:12:43 -0800 (PST) Subject: [morpho-dev] [Bug 4459] - Need a minimum display of access order in Access page Message-ID: <20091112201243.7AEBC28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4459 jones at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- AssignedTo|tao at nceas.ucsb.edu |leinfelder at nceas.ucsb.edu From bugzilla-daemon at ecoinformatics.org Thu Nov 12 12:13:18 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Thu, 12 Nov 2009 12:13:18 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091112201318.E271A28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 tao at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- AssignedTo|tao at nceas.ucsb.edu |leinfelder at nceas.ucsb.edu From bugzilla-daemon at ecoinformatics.org Fri Nov 13 17:05:06 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Fri, 13 Nov 2009 17:05:06 -0800 (PST) Subject: [morpho-dev] [Bug 4550] New: - launch4j only works for linux Message-ID: <20091114010506.9E3F5284070@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4550 Summary: launch4j only works for linux Product: Morpho Version: 1.6.1 Platform: Other OS/Version: All Status: NEW Severity: normal Priority: P2 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: tao at nceas.ucsb.edu QAContact: morpho-dev at ecoinformatics.org We installed lauch4j in lib dir. However, it is the version which only works for linux. In mac and windows it will fail. So we should do either install mac and windows version or ask user to install themselves. From bugzilla-daemon at ecoinformatics.org Mon Nov 16 11:43:14 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Mon, 16 Nov 2009 11:43:14 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091116194314.5A07C28406E@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 ------- Comment #2 from leinfelder at nceas.ucsb.edu 2009-11-16 11:43 ------- I've traced it down the the "glassPane" that is overlaid on the frame when the window is deactivated. For some reason OS X isn't sending a windowEvent for the activation when dialogs are closed or cancelled. This can be remedied by always specifying the parent frame for the dialogs. I found a few more places where this happens (on cancel): -File->Login/logout... -File->New Profile... -File->Switch Profile... I'm in the process of changing/fixing these. I will mention that we could just remove the Glass Pane thing all together, even though Dan Higgins explicitly added it (r2876): "added a 'GlassPane' to the MorphoFrame. When frame is deactivated, the GlassFrame is made visible so that tooltips are not activated, causing inadvertant window switching." From bugzilla-daemon at ecoinformatics.org Mon Nov 16 12:08:27 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Mon, 16 Nov 2009 12:08:27 -0800 (PST) Subject: [morpho-dev] [Bug 4417] - 1.7.0 - Dialogue Boxes Cause Underlying Window to Freeze Message-ID: <20091116200827.BFC4628406E@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4417 leinfelder at nceas.ucsb.edu changed: What |Removed |Added ---------------------------------------------------------------------------- Status|NEW |RESOLVED Resolution| |FIXED ------- Comment #3 from leinfelder at nceas.ucsb.edu 2009-11-16 12:08 ------- Fixed the spots that were identified here. There very well could be more places where this problem occurs. At least it's easy to fix. From bugzilla-daemon at ecoinformatics.org Mon Nov 16 14:11:01 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Mon, 16 Nov 2009 14:11:01 -0800 (PST) Subject: [morpho-dev] [Bug 4553] New: - Failure to save Locally-saved Packages based on MS ACCESS tables to Network Message-ID: <20091116221101.96AFA28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4553 Summary: Failure to save Locally-saved Packages based on MS ACCESS tables to Network Product: Morpho Version: 1.7.0 Platform: Other OS/Version: All Status: NEW Severity: normal Priority: P2 Component: morpho - general AssignedTo: tao at nceas.ucsb.edu ReportedBy: reeves at nceas.ucsb.edu QAContact: morpho-dev at ecoinformatics.org We created Data Packages for MS Access Tables using Morpho Data/Import MS Access Database option. Were successful in creating and saving the packages locally. But when we try to save/upload the locally-saved packages to the network, using File/Save/SaveToNetwork, Morpho throws errors related to empty or incorrect EML fields. Screenshots of the error messages and the eml files that generated the errors have been sent to Jing in the file "ForBugzillaSaveNetworkReport.zip" From bugzilla-daemon at ecoinformatics.org Mon Nov 16 15:52:49 2009 From: bugzilla-daemon at ecoinformatics.org (bugzilla-daemon at ecoinformatics.org) Date: Mon, 16 Nov 2009 15:52:49 -0800 (PST) Subject: [morpho-dev] [Bug 4553] - Failure to save Locally-saved Packages based on MS ACCESS tables to Network Message-ID: <20091116235249.C71BE28406F@ceres.ecoinformatics.org> http://bugzilla.ecoinformatics.org/show_bug.cgi?id=4553 ------- Comment #1 from reeves at nceas.ucsb.edu 2009-11-16 15:52 ------- Created an attachment (id=273) --> (http://bugzilla.ecoinformatics.org/attachment.cgi?id=273&action=view) contains MDB and eml files associated with this bug Zip file attachent contains MDB and eml files associated with this bug